Mathematical Biology
in Spring 2009

Department of Mathematics, University of Iowa
Spring 2009
Organizer: Isabel Darcy

January | February | March | April | May


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Wednesday, March 4 Thursday, March 5 Friday, March 6
 January 2009  
 
 Thursday, January 22
 
11:30 pm  Mathematical Biology Lunch
Organizational meeting
Room: B11 MLH
 
 Thursday, January 22
 
11:30 pm  Mathematical Biology Lunch
Speaker: Candice Price
Title: Protein Sliding along DNA: Dynamics and Structural Characterization
Room: B11 MLH
 
 February 2009  
 
 Thursday, February 5
 
11:30 pm  Mathematical Biology Lunch
Speaker: Shannon Talbot
Title: Propagating Activity Patterns in Large-Scale Inhibitory Neuronal Networks
Related, but more elementary article: Mathematics Reveals New Pattern Of Brain Cell Activity
Room: B11 MLH
 
Monday  February 9
 
3:30 pm  Mathematical Biology seminar
Organizational Meeting
Room: 113 MLH
Refreshments: in H.T. Muhly Lounge at 3:00 pm.
  
 Thursday, February 12
 
11:30 pm  Mathematical Biology Lunch
Speaker: Kamuela Yong
Title: Mechanisms of pollen deposition by insect pollinators
Room: B11 MLH
 
Monday  February 16
 
3:30 pm  Mathematical Biology seminar
Speaker: Soojeong Kim
Title: RNA-guided DNA assembly
Room: 113 MLH
Refreshments: in H.T. Muhly Lounge at 3:00 pm.
  
 Thursday, February 19
 
11:30 pm  Mathematical Biology Lunch
Speaker: Danilo Diedrichs
Title: Rationalizing translation attenuation in the network architecture of the unfolded protein response
Room: B11 MLH
 
Monday  February 23
 
3:30 pm  Mathematical Biology seminar
Speaker: Colleen Mitchell
Title: Do Real Neurons Have Time Windows?
Room: 113 MLH
Refreshments: in H.T. Muhly Lounge at 3:00 pm.
  
 Thursday, February 26
 
11:30 pm  Mathematical Biology Lunch
Speaker: Jeannine Abiva
Title: One-vesicle Hypothesis for Neurotransmitter Release: A Possible Molecular Mechanism
Room: B11 MLH
 
 
 March 2009  
 
 
3:30 pm  Mathematical Biology seminar
Speaker: Marty Golubitsky
Title: Symmetry Breaking and Synchrony Breaking

Abstract: A coupled cell system is a network of interacting dynamical systems. Coupled cell models assume that the output from each cell is important and that signals from two or more cells can be compared so that patterns of synchrony can emerge. We ask: Which part of the qualitative dynamics observed in coupled cells is the product of network architecture and which part depends on the specific equations?

In our theory, local network symmetries replace symmetry as a way of organizing network dynamics, and synchrony breaking replaces symmetry breaking as a basic way in which transitions to complicated dynamics occur. Background on symmetry breaking and some of the more interesting examples will be presented.

Room: 113 MLH
Refreshments: in H.T. Muhly Lounge at 3:00 pm.
  
 
3:30 pm  Mathematical Biology seminar
Speaker: Marty Golubitsky
Title: Coupled Systems: Theory & Examples

Abstract: Identically coupled identical systems of differential equations lead to a very complex class of (synchrony-breaking) bifurcations. We describe some of the theory and some of the interesting resulting examples. For example, synchrony-breaking Hopf bifurcation in feed-forward chains lead to periodic solutions whose amplitudes grow much more quickly than the amplitudes in standard Hopf bifurcation. This observation leads to a tangential discussion of models of the auditory system.

Room: 217 MLH
Refreshments: in H.T. Muhly Lounge at 3:00 pm.
  
 
1:30 pm  Mathematical Biology seminar
Speaker: Marty Golubitsky
Title: Geometric Visual Hallucinations

Abstract: Kluver (circa 1940) proposed that drug-induced geometric visual hallucinations could be divided into four classes or "form constants." Ermentrout and Cowan (circa 1980) proposed that these form constants could result from symmetry-breaking pattern formation on the visual cortex; however only two of the four form constants were found. Bressloff and Cowan (circa 2000) proposed including more of the structure of the visual cortex (namely, orientation tuning and Hubel-Wiesel hypercolumns) in the analysis. This led to the need for new bifurcation theory results and ultimately to the four form constants.

Room: 61 SH
Refreshments: in H.T. Muhly Lounge at 3:00 pm.
  
Monday  March 9
 
3:30 pm  Mathematical Biology seminar
Speaker: Jeannine Abiva
Title:Channel Noise in Neurons
Room: 113 MLH
Refreshments: in H.T. Muhly Lounge at 3:00 pm.
  
 Thursday, March 12
 
11:30 pm  Mathematical Biology Lunch
Speaker: Colleen Mitchell
Title: Biomechanical and energetic determinants of the walk-trot transition in horses
Room: B11 MLH
  

Spring Break March 16 - 20

  
  
Monday  March 23
 
3:30 pm  Mathematical Biology seminar
Speaker: Candice Price
Title:Overview of the Tangle Model
Room: 113 MLH
Refreshments: in H.T. Muhly Lounge at 3:00 pm.
  
 Thursday, March 26
 
11:30 pm  Mathematical Biology Lunch
Speaker: Rebecca Gasper
Title: A Dynamical Study of a Cellular Automata Model of the Spread of HIV in a Lymph Node
Room: B11 MLH
  
Monday  March 30
 
3:30 pm  Mathematical Biology seminar
Speaker: Wela Yong
Title:Mechanisms of pollen deposition by insect pollinators
Room: 113 MLH
Refreshments: in H.T. Muhly Lounge at 3:00 pm.
  
 
 April 2009  
 
 Thursday, April 2
 
11:30 pm  Mathematical Biology Lunch
Speaker: M. T. Padberg
Title: A Simple Model for Complex Dynamical Transitions in Epidemics
Room: B11 MLH
  
Monday  April 6
 
3:30 pm  Mathematical Biology seminar
Speaker: Steven Smith
Title: Optimal Control and the Harvesting of a Contnuous Age-Structured Population
Room: 113 MLH
Refreshments: in H.T. Muhly Lounge at 3:00 pm.
  
 Thursday, April 9
 
11:30 pm  Mathematical Biology Lunch
Speaker: Jason Graham
Title: Getting Started in Mathematical Biology
Room: B11 MLH
  
Monday  April 13
 
3:30 pm  Mathematical Biology seminar
Speaker: Bruce Ayati
Title: Building a model of cell dormancy in biofilm and planktonic cultures
Room: 113 MLH
Refreshments: in H.T. Muhly Lounge at 3:00 pm.
  
 Thursday, April 16
 
11:30 pm  Mathematical Biology Lunch
Speaker: Bruce Ayati
Title: Epithelial - mesenchymal and mesenchymal - epithelial transitions in carcinoma progression
Room: B11 MLH
  
Monday  April 20
 
3:30 pm  Mathematical Biology seminar
Speaker: Rodica Curtu
Title: Mixed-mode oscillations in a reduced firing rate model for binocular rivalry
Room: 113 MLH
Refreshments: in H.T. Muhly Lounge at 3:00 pm.
  
 Thursday, April 23
 
11:30 pm  Mathematical Biology Lunch
Speaker: Rodica Curtu
Title: Giant squid-hidden canard: the 3D geometry of the Hodgkin-Huxley model
Room: B11 MLH
  
Monday  April 27
 
3:30 pm  Mathematical Biology seminar
Speaker: No math bio seminar
Title:
Room: 113 MLH
Refreshments: in H.T. Muhly Lounge at 3:00 pm.
  
 Thursday, April 30
 
11:30 pm  Mathematical Biology Lunch
Speaker: Young Seol
Title: Nucleic Acid Database
Room: B11 MLH
  
 
 May 2009  
 
Monday  May 4
 
3:30 pm  Mathematical Biology seminar
Speaker: Young Seol
Title: Tilt and Twist of DNA
Room: 113 MLH
Refreshments: in H.T. Muhly Lounge at 3:00 pm.
  
 Thursday, May 7
 
11:30 pm  Mathematical Biology Lunch
Potluck Party
Room: B11 MLH